Scaffold Ga0208854_1000017

Overview

Basic Information

• Taxon OID: 3300020517
• Scaffold ID: Ga0208854_1000017
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 30NOV2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33897
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (6.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F042157	Metagenome	158	N
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F068425	Metagenome	124	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208854_100001725	F044325	N/A	MKQLIQRLLFGYRNNPHAYTPKGGAKLTYKGGNAEAIHSALVLMQYNIRNAKD
Ga0208854_100001728	F102493	N/A	MKTTLTLTLHFDYENDDRENNIRGGWVLTDITNGNTPVYLSPKLEQLLNEELDPENF
Ga0208854_100001729	F062749	N/A	MKTKPSLILWALSALFMSFWAIKFAMTGVFFGNSELLTFTLSFCASLTSAVCGAGFMQQWLKK
Ga0208854_100001730	F041191	N/A	MKLLYKPTNLSCEFVISDFAKSEGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGQRIIQRIGRYQIGELVKVRLHWGYYIECKANDGYAFRVAPKCSFPIGYMLYPYAEKDGVEGIEVPFNIEIINLKID
Ga0208854_100001733	F049410	GGA	MTRNTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKNDLIMPLVEWNIKAKFEWEII
Ga0208854_100001735	F042157	N/A	MNLKQKYRSPDNKQLKKIADYLIYVLLPFIQTSLALAETQGLITLKQAFWGGLAATFLLINTKFLTKFTTETPTRTAVINGDGC
Ga0208854_100001736	F068425	N/A	MGAKNNNMKPHHQLITFAILCLLLVIGLNHCAKEKPKVIPFDYKAEAEMMKKQFGIEQAILLNQLESVNRRLQVANNAKDSIRQREISLTNTNIALMKKLRHTLPKDCDTVFVLCDEIINVKDSSYAALFNAFQICDSVSTIKDSLIVGYKAENVTDSTLLAISKQETKQQRRGKVAAWCVGGAMFILWLVVGLK