NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207935_1006215

Scaffold Ga0207935_1006215


Overview

Basic Information
Taxon OID3300020516 Open in IMG/M
Scaffold IDGa0207935_1006215 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2045
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061527Metagenome / Metatranscriptome131N
F066480Metagenome / Metatranscriptome126N
F100357Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0207935_10062151F100357N/AMDSHSVKLLQNRIMLKFFTAKLKFVDTNCILCKKIVDTIAIEKTKETQEMDLDLLEKKTKALHVRLIMKRQTLIAGLKLWYQMPIKIYNEEELLRVRRVIKSVIKLTRRAEEMLKREVIP
Ga0207935_10062153F061527N/AMSDYFEQAFSEILSAIKRLTIKIGTAIRIEQQRVPADPNIRTVHHYHTIIRTKINQLSSRAAIMSIKTDQYCLIKVYGTLLIMVDRALGESNPKSKYVQLKLLHRMLEDFENNSTFSYWKDHVILGDRAVRETDG
Ga0207935_10062154F066480N/AMDIFKERENQVVSKLLFIQGGQPIYQYRQVLKLLKEMIQELEGYDKKPHLLDNINRYISSIKRRIGYCQIWTENWTQINVFSKEEEVLQELLKYILERMITCLDTESKEERAKMTYCLKIETFLKIHQTRKQSIENNFILEVTE

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