Scaffold Ga0207935_1002116

Overview

Basic Information

• Taxon OID: 3300020516
• Scaffold ID: Ga0207935_1002116
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4122
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011134	Metagenome / Metatranscriptome	294	N
F016243	Metagenome / Metatranscriptome	248	N
F018323	Metagenome / Metatranscriptome	235	N
F022147	Metagenome / Metatranscriptome	215	N
F022593	Metagenome / Metatranscriptome	213	N
F055419	Metagenome / Metatranscriptome	138	N
F100356	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207935_10021161	F022147	GAG	MQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKCRIQKSKDIVTLEKVSIANKLLIKTLSEEVRNALKEQLALVSKVGSTFTNLSLMYTY
Ga0207935_100211610	F018323	GAG	MCNTKNNDEIVELIKSLEENSVDLTSAMDTVRVLDELKLPLFEHILNNQICKDLNTISTEINHDREDERVFRKIFHKVRVLKLKNSEWKFKHRAKKSTYSRKRMIEEERLTLSQEEARELVKFERETEIINQINIEKSFEENRHLFKLIKESRFTRVGRRNWLSFYRFPDLRKITIYNEKNFLCKVEGIRRKYSRLKWSIVL
Ga0207935_100211611	F055419	N/A	NFNFVVETKKRNKLMTETLAPHERLALYNLTDEEIERIEEELVKHFPREEFAEIHIEVWRTYEETGALQIHKLIEAKYPGNSRAGQRAITWFKIAKVLPHRVHRNVQH
Ga0207935_10021162	F016243	N/A	MSEAQITKIVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKAYQEVDDVCEHLLKHHLKSEYIQMHRPSFLNTNTIEDSKAGFIKRLLEVSDSRESLKIQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVMYEFLIENCKNE
Ga0207935_10021163	F022593	N/A	MNRQEELKFFRDKVEQIRKYKLANYLAKRDIADILLMEDLEAESRRSLAHNHELLGRIDLLLGILEGIGELIIEFKEQEAI
Ga0207935_10021168	F011134	N/A	MPTFARLEDNYDLKETLVDTIKTDLVSQFKVCVDDINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRVEDPGWSINNTRRDFPILLTSEDIGLMNNHLESREK
Ga0207935_10021169	F100356	AGTAG	MEYRTLKNEIELLESVQRLMNEVNTELDFNDNHMTMLELFSTMKRLKIIQPKWIFKVARTPPLEENIFFRGKKKN