NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207935_1000333

Scaffold Ga0207935_1000333


Overview

Basic Information
Taxon OID3300020516 Open in IMG/M
Scaffold IDGa0207935_1000333 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11649
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017816Metagenome238Y
F019289Metagenome230Y
F049573Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0207935_100033312F017816AGGAMACWLIALTGCIYVCVAADLAWHGKTGLAIAYAGYAFSSIGIYLAATR
Ga0207935_100033316F019289GGAGGMSSPLSDAYLQQCEFDARRFSGAYTGTAGTLAAHVMRLLAELSRVKGRLAVTIAQRDELPCLSHIRGD
Ga0207935_100033318F049573N/AMVVALPEGKKLISTAEAAKILGVTMGRMRQLALLEPDKGGLQSWLAAPTARVFDAEEIRKRAKAKRATGRPRGGFKAN

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