Scaffold Ga0207935_1000106

Overview

Basic Information

• Taxon OID: 3300020516
• Scaffold ID: Ga0207935_1000106
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22591
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039989	Metagenome	162	Y
F054796	Metagenome	139	N
F062553	Metagenome / Metatranscriptome	130	N
F066715	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207935_100010623	F039989	GGAGG	VRFLLAFCVVLVGCVATLPGDNGVTADLACETARMVVQLRNEIAPSPASDRCENCDGTGKIGDGRIVMPCPICKGTGKK
Ga0207935_100010624	F062553	AGGA	MTLPELQAHVWDRLPTLQRTVAGRRIVSRIVKSAVRGWPVPVLEQCNADETQVVAKHYTKQIERAARHEFGMGIILTLVLGALVQEVVKLLVQWWLARQENRTQMRLLMREARNYD
Ga0207935_100010628	F066715	AGGAG	MADSIISRKYRDFDITLHTATSLATTLDMRDVAGAVVSFGTMNTNASTLQMWVSPSSTGTFRRLYKSDGSVADLTLAASSTDGRAYSLPDEVFGTEYLKIVSATTNSTGTSGVVMFKS
Ga0207935_10001068	F054796	AGGTGG	MSRRKPSPQAVADVCLASAWRDEIDDESRILLEQAHDTIVSLMARLVATSKILEVVEAEMASHKFPLLGDEDPGMAL