Scaffold Ga0207935

Basic Information
Taxon OID	3300020516 Open in IMG/M
Scaffold ID	Ga0207935_1000019 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020516 Open in IMG/M

Scaffold ID

Ga0207935_1000019 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	56781
Total Scaffold Genes	90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	75 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

56781

Total Scaffold Genes

90 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

75 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020324	Metagenome	224	Y
F032198	Metagenome	180	Y
F047555	Metagenome	149	Y
F067543	Metagenome / Metatranscriptome	125	Y
F081247	Metagenome	114	Y
F082205	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207935_100001912	F047555	GGCGG	MSLTAQVQASVTARLQSQQGLTTAITEHPIEFSFDVGDCTKVFSDRRTILSGGFDEVDFATLGISVVKLLCIKNLSKTNQIAFSAGWTGSQFSVFRQDATSWNFSPMINLGSLTLRGYPIRAGGAMLLSCPNSAGFATTFGGSTLRIGGTNGQSYEIYVMGT
Ga0207935_100001921	F032198	N/A	MSVKRLLREVDSEEIAEWYAYDQRHPLPDSWAQTARICRIIMAASGNYKKGDVPDEAVFIPTAVKPEQSQAQIINELMKLNAPRQG
Ga0207935_100001940	F020324	AGGCGG	MPTVTLRFTLPDEQGEFDAARLGREALSTLWEIDQHCRSRVKYGEPTPAERELAEEIRRLIPAELLER
Ga0207935_100001951	F082205	AGGAG	MSTAIATVKTVDYPALSADSRQAKIISANLDGEPMNEQDLIKVPTPAGGGVTWNVDNNGNVESTDEIVGLLVAIGKKGVLWPKDDPSEMRPVLVSNDLLVGYRVSDDLGDIDPKALEKFRVGDRRYDWAALSASPEFGYGSGKSGAGKKVKEARVLAILRQGDVWPLLVSIGPGSLRAFLPFAKRLPDFHYACVIGLKLTKVKSSGGQPYSQIVPRLVGTITPEQAEVARVTYTEPLKRMFSAPPSGATVTVDAHEEE
Ga0207935_100001972	F081247	AGGAGG	MEERPEDLYGANLPILDKLKLLAEWAPLLGRVQVIMDAKTPYDQALAVVKALQWAAGKSDVEVDDEALFHLEALLKTPEGQAFFQWIVSKVQA
Ga0207935_100001987	F067543	AGGAGG	MRIPPTVETEYRLSPRVVLRPGDRFKASAGPYYRLDDGRRVPMAARGTFVLVEIVRQRTRVFLLAYGRDGWALLHVEGRRRSRVPGLVCRPYKIRRASRVDTRRADA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207935_1000019

Overview

Ecosystem & Geography

Associated Families

Sequences