Scaffold Ga0208234_1019823

Overview

Basic Information

• Taxon OID: 3300020515
• Scaffold ID: Ga0208234_1019823
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 787
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011150	Metagenome / Metatranscriptome	294	Y
F013409	Metagenome / Metatranscriptome	271	N
F098928	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_10198232	F011150	GGA	MDINYYHKQHEKIKQQFRHDIIMQKLKEKEYREYKNMFIKLLLIFVISVLLITLIAR
Ga0208234_10198233	F013409	N/A	MMNGTIYNLGYEIDSYSSRICDKLFDKVTYVGKTSGKNKIGTFYKSKEVFAHSCSIEKTTKGNNERKNKTG
Ga0208234_10198234	F098928	N/A	MKEKIKQVNDLCAANGAYINQHGKKTVSAWSKIKYFREVFGTEFGINCVIQEHSDRYVIMKCIITKCD