Scaffold Ga0208234_1017008

Overview

Basic Information

• Taxon OID: 3300020515
• Scaffold ID: Ga0208234_1017008
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 864
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F010915	Metagenome / Metatranscriptome	297	Y
F037694	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_10170081	F010915	AGAAG	MKQKLPPHNMVVVNKIGFDLYNISYVKYVDHDVVQHIKYNLSAEDVAQILGNI
Ga0208234_10170082	F037694	N/A	MLNKEQAFVVNEFIRKNATRNLWEVSDKLYTLISEIKKLEEAEVKNETETAAA
Ga0208234_10170083	F006546	N/A	KGEVYIVEIYDAMEKYAKEDMPQFINVVVIQPPRPRSNFLQMKIGDTIKICNPYYEMMHYSHPGFVPVKE