Scaffold Ga0208234_1003427

Overview

Basic Information

• Taxon OID: 3300020515
• Scaffold ID: Ga0208234_1003427
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2299
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F004476	Metagenome / Metatranscriptome	436	Y
F011390	Metagenome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_10034272	F011390	AGGAG	MKIQTTKYGLCTVKKHKYQTNGNLGLSLVDEDGCPITYISTNILPLAENEFCANIFNIGSTLWNDIATSGLFEKTGEDIQSGFCEYPVCKLLVEID
Ga0208234_10034273	F004476	AGAAG	MLFSKNGFMSVDTTEAFVKQALEFGNKDVVLSVVHSDGVIDIVFSPTMDAIEAEVYHFLNDGTELKYSMPIKTLTDNNISSLHLTSAIYAYLSEAFKVADMFRSTTRQSTDYAN
Ga0208234_10034274	F003750	GGAGG	MTLDMVNRLMYLVFWGGGIVAFWQITKHMPKALYTLLECISVMACSVLLLTPVAMIIEYILGGNIHTTMMFAGCLAGVGLLCGIWMVMVQSSRELQGKKQYQYVVL