Scaffold Ga0208234_1002724

Overview

Basic Information

• Taxon OID: 3300020515
• Scaffold ID: Ga0208234_1002724
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2651
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F018001	Metagenome	237	Y
F024555	Metagenome / Metatranscriptome	205	Y
F038234	Metagenome	166	Y
F038242	Metagenome	166	N
F062757	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_10027243	F024555	N/A	MLTIKNIEKLTQYGAVEDWRVGKVVTLDSSYLIQLYKHNRRETMQVNIERTPIGEGDTALYELWFWEDDSGGAKPIRRLLRKCDFELGPLYVIKNIENMMDLK
Ga0208234_10027244	F038242	N/A	MLTIKNIKELELNFCHQRGLREITETQNKLGEQFYSFHFGPISDGNGYNKEIEVRLGRNLKGKDYEIFVMGLHLATRHFVTIDDVKTKGGLASEISKVLAKAEHWWKTEATK
Ga0208234_10027245	F007690	N/A	MRNTTNETQNKTDKEAELSIKTKPKKILNSTRWGVDDIDKLNYMLTIKNILKLQSQPIWDGWEVKLIYEGNHNDTYVFQLVKRKPLPMHNELCTIMLERIGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL
Ga0208234_10027246	F018001	N/A	MLTIQNIGDLNGAQLNDWKVLTAGEDNRPELGKNIYIITFARMDNTGVMLDDRAGVIIDRNINPLLKGYHIKVVYESWDYEIHTTTWPALTIKGKDAFFGMILYRINEEYYKRNSK
Ga0208234_10027247	F062757	N/A	MLHIQNIRKLGGRRLFGGWIITAVGGNPNEPQYLFDIHCNGPIGNRIDGCTISLNRIGELQRNMFKPDTTAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKK
Ga0208234_10027248	F038234	N/A	LRIKNIESLKGTYVGHWKIHYVAELQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGGYLMYCQETGKALDSMPIEDIRDRDTFIRFLIDELI