Basic Information | |
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Taxon OID | 3300020515 Open in IMG/M |
Scaffold ID | Ga0208234_1002472 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2807 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000325 | Metagenome / Metatranscriptome | 1296 | Y |
F006543 | Metagenome / Metatranscriptome | 370 | Y |
F012108 | Metagenome / Metatranscriptome | 283 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208234_10024722 | F012108 | GGA | MIKIELSVRESLNMIANGCSLDMFDKIVCALEVALGVNQRRMVTITGGLTLDNRIHSIKAIRLHTGWGLKEAKDWTDYLVGGWHYDKFVPAKSGAKQSITLKTPEAAEALLRDLAGLGCEGYLS |
Ga0208234_10024723 | F006543 | GGAG | MKKFSFVVDVVADELDRDGVVDSIRDCLSDSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHDGKVEKETTEAVA |
Ga0208234_10024726 | F000325 | AGGAG | MKYAEGNDKLGKNCLVVSRPVGDTCPPDCAFLDNGCYAENTEKIYPGVRPAGMQNLITEKNRIRSMILEAKRRNRSIRFMERGDWLLNGELDISFVENVVWACDSILADGDTLPKMWFYTHVYDERIPAQLGKYFSIFASIHNGEHMKIAKSKGFTKFAWCDSDQKIAPKRPKNKAKADAWRQALPKLVILEGEKFITCPEIRRGRSFVTCTGTKDSQACNMCLDKDKPNVLFPCH |
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