Scaffold Ga0208234_1002024

Overview

Basic Information

• Taxon OID: 3300020515
• Scaffold ID: Ga0208234_1002024
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3157
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056336	Metagenome	137	Y
F088364	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_10020242	F056336	N/A	MVQYWLDRARIKDGPTDVTVVPVSFVTTELADQLNRIVAPEDEIVDGEEAAKNDWVFELKPGDVFPVQIIASIQETLNASKFDAMMFPVVYRGSPVFEKRFYKRSGSENVQQANMPIFNLNPPPAESSV
Ga0208234_10020247	F088364	N/A	MWVLNIIEQCRPKNFQVHQMFRHDGNELIPVNEFKPGEHGHVDYYFGGQMYTHIGNWPIQNIVPRFSVPVHSAIFTDNCDRKPVFCTEIIRRHSGPTQSPVSFDVYSPRPHFTVSFSGGLKISLGIKWVLVKKVSGTVCIQNVLGQVTRVQV