Scaffold Ga0208234_1001387

Overview

Basic Information

• Taxon OID: 3300020515
• Scaffold ID: Ga0208234_1001387
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3879
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008812	Metagenome / Metatranscriptome	327	Y
F086678	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_10013872	F086678	GGA	MAKYYIKCGTLELIYSCNKCPRDAAMDAIWETNENDTLDEHIYLDERGYRNYTNADGLTCVLHTTHILKDAGWSIE
Ga0208234_10013874	F008812	AGG	LVDNKDMRTRRESTKGERMIQWIGILIAVVGLAYNGVKDYQKGDIKIPPLRHPSQEQKQVLTKPVYPVQYCLMAYDPNIDKVFYLHENGQWHDYAPQQRRYATQTQPYQNQGSTAVASSYGSQGTPSYRYGQSPQANPNPIR