Scaffold Ga0208234

Basic Information
Taxon OID	3300020515 Open in IMG/M
Scaffold ID	Ga0208234_1001302 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020515 Open in IMG/M

Scaffold ID

Ga0208234_1001302 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4029
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4029

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F008496	Metagenome / Metatranscriptome	332	Y
F016662	Metagenome / Metatranscriptome	245	Y
F043404	Metagenome	156	Y
F081267	Metagenome	114	N
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_10013021	F007525	AGTAGG	MKTLEGVTVEYTQTIPTSKQMPEFYVWQEGAESYATITYLDRVVEIERNGEMHLTLPSLVNGELSDEGADVIRYSDDLEAAGFSDDIQLMQFIKTISNSGFEIYRMNPWWEVFAHNEDMGEVYDTFYEAIDAGI
Ga0208234_100130210	F008496	AGGAG	VEFTTSEPTFGIPATITPMTEQVAVTPAYDPKATILVRKGYYYGTPSDSKFELENAEDISRAFWRVDALQSTNNSNSRAQDKLKDYLVENFDEIGEEHATEIANIFGMDLSKTVDVEFNVTIKATISIPVNEDVSDLSVYDFDIEISSNESKYEILESDADIDSIDERY
Ga0208234_10013022	F081267	AGGA	MSYEYHWVVVYDEDWGAFMVDVETTMINMADHPGLIYNKTSGRWEDDLKQGSELEAEYQRLEEILAYQLTRLDIPKKV
Ga0208234_10013025	F093864	GGAG	MYNYNVEFVLEAMVMITGVSFDEPDLSDEFIIEEARQNILSYYKIDPEVLHLQDVIVHEV
Ga0208234_10013027	F016662	GGAG	MTYLVATTEVIYSEEALIKMMLDTGEYGIHGHPISHEAMVEFVKDQEWQIEHNLFLDKFDVPCQISIKDEDGTDLFFAKNRLEIV
Ga0208234_10013028	F043404	AGGA	MIDVTDPLLSELADHFVELHNVGGIELEQWETAYNFVKKFYNTEEMVQIVIREKKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208234_1001302

Overview

Ecosystem & Geography

Associated Families

Sequences