Scaffold Ga0208234_1000093

Overview

Basic Information

• Taxon OID: 3300020515
• Scaffold ID: Ga0208234_1000093
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14488
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F007169	Metagenome / Metatranscriptome	356	N
F008080	Metagenome / Metatranscriptome	339	Y
F035278	Metagenome / Metatranscriptome	172	Y
F060851	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_100009311	F001732	N/A	MTTKLPILIILVFLFTGCFSTIRPAKQIDDNQKVIAKEEKKVDTTLVEIEKNDKGKRIQTSGLSVGIQHSLNQVTNAPVQVDTARKLNERVISIVGSPHIDEIKRIKATVDLLNSALVEERRKGEELLAQRDDIINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFVVSALTAIVVFVVVFVLLRLLATVHPAASAVFSIFNMLGSAIISILKALTPKAFELANFATHDKVEQFKSPLVKIVDVIQELKEKQKESPDKIYPLTEILKRFDKEMDSDEKDLIDDILKEQKWIK
Ga0208234_100009319	F060851	N/A	MKAILEFNLPEDQKRFEMANQALDMFSAICHFEDRLRSYHKFGHDFKTADEAIEAIRTLLYEEINIRRINIHD
Ga0208234_100009322	F008080	N/A	MLKIKIWMRGTFEYSQDTIPGPTEDQTQEQFEESFIESDECYWGGEVYETCPYFDEHGCDSIDVYLGGDNNIRNQEEPIFTTSDWSQFKFEEGGGCNYVPQAPEKVGEVNIWWSHDMKFNYIYYWENVTEFDPKKITIQYGTNQKDQRYLEEIYYDGEPPDDYHDHGDTGYGYNGPEFIYHPDQKFAENDEE
Ga0208234_100009329	F007169	N/A	MSYQLDFDFETPEQKEKRLKDWHDQEAEIDKLFGEDDNYYTYNKYVDKLIGLLPYRLGWGFKNNWYELRWWAKCKYQKFRYGVSDDDVFSLETNIAKFIVPRLQYLKKVGKMGIPMKFLPNDYTSLSEEDQRKAEKIAEKEIDRIMDEIIFAFDYIIDPDKYAPFPQSLTKWDLKDRNYFNREKTIEEKAGWDEYMKKCEELNARKKQGLLLFVEHMDILWI
Ga0208234_10000933	F035278	GGA	MNDKHIKKIIDKQFKIANLDLKYEDICDNQTPNWHTKYTYSPEDNEKWKNWTMRYMREKMKLTKDKALIETAWIDLNYGLRTSNHSVRKSNKKK