Scaffold Ga0208234_1000004

Overview

Basic Information

• Taxon OID: 3300020515
• Scaffold ID: Ga0208234_1000004
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57908
• Total Scaffold Genes: 126
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (18.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075076	Metagenome	119	Y
F093295	Metagenome	106	N
F099304	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_100000414	F093295	N/A	MIKRIFQDLDECILHTYANSVPPSEYVEFILSEDMHTYRTMIRPCAKRLFEYYNSVVGKENVYILTSATRDYAHELNRLGEFGLDNDHIYTREDIQQYSISHGYGGEGTLPMPIADKDNVLIDNLPPRYNYNKMDMMGIVTKNYYQTREYYGLNDDDEYFFEDVVEFIKARL
Ga0208234_100000426	F099304	N/A	MKTTIEFVSDLTEAEVRQLLFDIYERVPIAGEDLSYSALPDKITRYVNEAHRLFALEEAVTAYIVEECNNGNIGVQDPINFLLASHRMLRYNLHDTWKEEY
Ga0208234_100000495	F075076	N/A	MSSSSKSKGGVKTVQWWKHLRKYYKRIQNKRVRKDGKKEINKEH