Scaffold Ga0208202_1003115

Overview

Basic Information

• Taxon OID: 3300020514
• Scaffold ID: Ga0208202_1003115
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27AUG2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2727
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008235	Metagenome / Metatranscriptome	336	N
F016959	Metagenome / Metatranscriptome	243	N
F045698	Metagenome / Metatranscriptome	152	N
F079785	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208202_10031151	F079785	N/A	MKYRIWSKNAQCYTHEPCYPGSSLHCASNYYLDNDGNIVDFVTTIGSNQDDASKCDVDQEAYKIELCTGFKATN
Ga0208202_10031155	F045698	N/A	MNLPTKQPDVIDLTKSIRETHYQLQLDYQALMLKATTLQAENEELKERLNKIAEKIQLDI
Ga0208202_10031156	F008235	N/A	MINYLKNLFKKKTEPETTPVEQPKNNYYLAKYRSNVSLHITYNQLDTDGYHEYRQYENIESDDNLVFLEQKNKKIKEYQETISNINEQLKDNSSEYIMVQKVFLFKKSDFVNANIIIKDNDLYESTN
Ga0208202_10031157	F016959	N/A	VKHKWPTLKARLQHQLKDELTALHQLKSVLPLSKQAQKLYDKLFKKSIQEKD