Scaffold Ga0208202_1000529

Overview

Basic Information

• Taxon OID: 3300020514
• Scaffold ID: Ga0208202_1000529
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 27AUG2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8621
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035281	Metagenome / Metatranscriptome	172	Y
F036210	Metagenome / Metatranscriptome	170	Y
F061803	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208202_100052910	F036210	GAGG	MKTRVVSEFNRKDIQRKYIDQILGSLDFMEIKNLLRDYLQKEKDRESNYALEAEIRKEAPDVLVDNWEDFGGPATLSQEHYHA
Ga0208202_100052913	F061803	GGAG	MEIDITKQEAWKLIDAINAYMKDYTVTGAVHKTFDNITKKLKEVVKE
Ga0208202_10005296	F035281	AGGAG	MMKFALVFALMFVGSSAFAGECVSGNCTLRSRVVNVTREVIAVPVTVTRRTVEATRNVGRKTVARVRSVVR