Scaffold Ga0208090_1013468

Overview

Basic Information

• Taxon OID: 3300020513
• Scaffold ID: Ga0208090_1013468
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1267
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006844	Metagenome / Metatranscriptome	363	Y
F019826	Metagenome / Metatranscriptome	227	N
F068818	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208090_10134681	F068818	N/A	CPPDTTIQVLISHNWFYCENCGAEFEDPNNTIRDAFDEEDLQKCPQCATIEELTLVGLETQNNANI
Ga0208090_10134683	F006844	AGGAG	MAKWEIEVIFEPTGDYMNFVYETDTEDEDVIFNEVSNQLSIVPNLVEKNEEE
Ga0208090_10134685	F019826	N/A	MGFMRRSIRLGISKEEKVAGRITTLLSDFTLDLEAIGFYLAKGAPHIIYTRANEVLEAMQYNKEVEQLDRGAYYGNGR