Scaffold Ga0208090_1004063

Overview

Basic Information

• Taxon OID: 3300020513
• Scaffold ID: Ga0208090_1004063
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2609
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019324	Metagenome / Metatranscriptome	230	Y
F061860	Metagenome / Metatranscriptome	131	Y
F090399	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208090_10040635	F019324	AGG	MLGYTKTDLDEMTNAIDSAMTTVNPDDDPWLHSRLFMARDFLDGLWAEGYFD
Ga0208090_10040638	F090399	GAGG	MHAFIEYMKIHEISLLQDLEKIDYVNEHHFYRTKEAEIYNTRHLLSVAEDMIA
Ga0208090_10040639	F061860	AGGA	METTQLDPRLQKLVDLGESGTDILHGELKNMMYECEKTLVPLLENSDELGSDEEYEDTVERLYNSGYMDALSSVYALTYQLAFAISDRAKANG