Scaffold Ga0208090_1002386

Overview

Basic Information

• Taxon OID: 3300020513
• Scaffold ID: Ga0208090_1002386
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3456
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010302	Metagenome / Metatranscriptome	305	N
F024955	Metagenome	203	Y
F030063	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208090_10023865	F010302	AGCAG	MVDVLLNTDDVVVIGPPDSIDLLVDIGPQGVRGSKFIVGSGEPNALTASGVLFGNTLILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSSVRTVNFTSGAGSTTIPISNIVTVSGSPLTASNFNVQFQIEGANPIASSMEIPALAGAGTNLVINFDAVQYSGGTWSALTGSKTVHLFISIV
Ga0208090_10023866	F024955	GAGG	MAVENIGNLVPTKIPALADDANIQDALKAYHYGSYDFDTAETDTANLLNPSIAYTINDLQEQIDDQVALELAARDSSRVTTTAPTAAAFTAFSNTIPDGYIWVDKDAAAPVGYISATSVYTATQPTTGLANGVIWIKKGSNPLEMYVYNGDTNAFDQVV
Ga0208090_10023867	F030063	AGGTGG	MPTSFNYDGKPGYIYNVADDTWYELSGKTDTSGTFEWAGLQSYLSAVTMLEALVAKKGINNYLNPAARDASITSPTAGSICVIRQDGSGNVINQLQVYSGSEWIHFIPAQAGKAGKVLQTDGIITSWQDSSGLPELFLLMGG