Scaffold Ga0208090_1002044

Overview

Basic Information

• Taxon OID: 3300020513
• Scaffold ID: Ga0208090_1002044
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3732
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012345	Metagenome	281	Y
F015976	Metagenome / Metatranscriptome	250	Y
F030019	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208090_10020441	F012345	N/A	LEFTITTKLVKMRYKLTYQVGQKVVQEWILTSQSLAYWKKQDLLKTGQYQLGKFIVTPIE
Ga0208090_10020444	F030019	N/A	MIVTELKDFEVYRDTDKNFVYLFVTLWDEGDTDTNAEILAEYEIEIYDSYSNYKITKKNYNEILTIKQTQDCDDYLEKIYEANTFEDAYVEEYNDEGTWWFI
Ga0208090_10020448	F015976	N/A	MTGCTSRLAVSSVILSLLLAILATSCSVNYHVRKAFKKGYKCDEVADTIQITSVDSIPYVLRDSIMWERVLVQKDTIVRYKRSFVPQTRFEKRIEYKLKRDTLRMIEKVEVVKWKTEKRKNPKPNILLLVLGFVVGMITNWLLRNFKPTL