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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020513 Open in IMG/M |
| Scaffold ID | Ga0208090_1000422 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7697 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (94.44%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002269 | Metagenome / Metatranscriptome | 576 | Y |
| F007029 | Metagenome / Metatranscriptome | 359 | Y |
| F015095 | Metagenome / Metatranscriptome | 257 | Y |
| F023592 | Metagenome / Metatranscriptome | 209 | Y |
| F029049 | Metagenome / Metatranscriptome | 189 | Y |
| F066777 | Metagenome / Metatranscriptome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208090_100042210 | F023592 | AGG | MNSLDVLIGLFACFMSFMFMVIGYSIGHRQGHGEGFIRGRAIAQALKDKELI |
| Ga0208090_100042211 | F015095 | AGG | MERAQLLIGITLGVTTILGLGAGLIQKLVKYYLSELKPDGNGGHNLAGRVERIEKRVDRIYEILLEDRLNK |
| Ga0208090_100042212 | F002269 | AGGAG | MKEQVIENAKSYLRHAVACTGALYLSGITDPKVLANAFLAGLIGPLLKALTPSKSANGVKVK |
| Ga0208090_10004227 | F029049 | GAGG | MVMCTMSRVAKVILDRSQEITAHRVGLELTIIRNADPSDASNFGQKYSNWHELVWQEAEGAGAEIAVAAYFGDFGFKPAVDNGHDTADVGENVEVKWTKHGNGHLILQNRGPGRPNDVAILVTGYSPVYTLLGWMPVHMAKQARYKHPHQNNYWVPRASLFEMQYLKRSNYGDI |
| Ga0208090_10004228 | F066777 | AGG | MGELTFIKDGLATTIHDNGDMTVVAAKQCDECAKWQTELGGFNVRDVSGEVVLWLCAQCR |
| Ga0208090_10004229 | F007029 | AGGAG | MSFLDNYEDVNARIKRFRAEFPSGRLIASIEHIDVMAGTVLVKAEAYREYEDQVPSAVDYAFGNVSTYPNNLKKWFIEDTITSAYGRCIGLLTPSLDHKARPTVQDMEKVENLPADPDPWSTKASIEDMTTMASAVLEIGKTLGGEQIAEAPRCPHGTMIWATGEAKSTGKPWAAYKCTERVRANQCTPVWHVLNSQGKWVPQV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |