Scaffold Ga0208090_1000169

Overview

Basic Information

• Taxon OID: 3300020513
• Scaffold ID: Ga0208090_1000169
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12345
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058094	Metagenome / Metatranscriptome	135	Y
F082584	Metagenome / Metatranscriptome	113	Y
F087098	Metagenome	110	N
F105022	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208090_100016913	F105022	N/A	MFNLKKTTRYMLPDRLDDDDMTTALCMPGSKPLVVQAVLQVLRDHIDDSVELVGSIKVATEHGQLAHCAGALDALRGLESDLLQRIDEASKKM
Ga0208090_10001693	F082584	N/A	MATVFKLLRSTVPGRVPTAAQVAQGSLAINLADRRLFSKDHNNEVFRIARPRDPSDYQLLHATDGTTLYMGRLAWADYPATGPAEDAPSWTIYKITTNAAGDVVSEQSAVGAWSSKESLQFS
Ga0208090_10001695	F058094	N/A	MSQVSFDPLTGNMISTTAQVAQLDSSGQVSGSMIPDEFDDVQTFPTVENFPAPGLVGRIYFPADTNLPHRWDPETLSYIPIVADSDGGEF
Ga0208090_10001696	F087098	N/A	MSNPTVQIAARSSAGIVQPVQATSDGALRVTTGFPVPLYDKFEVFKVGATNNTDYTEYSFAGTAVARIRMTYFGGVPATDNAQLKTSFVQYPPFA