Scaffold Ga0208090_1000031

Overview

Basic Information

• Taxon OID: 3300020513
• Scaffold ID: Ga0208090_1000031
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35808
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (84.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036210	Metagenome / Metatranscriptome	170	Y
F085623	Metagenome / Metatranscriptome	111	Y
F104075	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208090_100003124	F036210	GAGG	MKTKVLTEQNRTEFQRKYIDHILGSLNFMEIKDRLRDYLEVEKDHSSVSALEAEIRHEAPDVLVDNWEDMKGPATLTKSGR
Ga0208090_100003128	F085623	AGG	MTLFRTIVLEYDLIEIHYNKKLKNKPYLVRVFSYNNSDPHELRIDISELKDLYKILKQHKIL
Ga0208090_10000318	F104075	GGAGG	MKIANKKRKQVSVEFLEHIKNTVNDMLSTRIPQSTKQKLCILVEKMLMETKSYEGFKYLYWSRFGCLDWEEAKQKGVYKHVPQEYILGPDATDNPDFISDIQGEYSRRYT