Scaffold Ga0208090_1000018

Overview

Basic Information

• Taxon OID: 3300020513
• Scaffold ID: Ga0208090_1000018
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47088
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (73.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F012658	Metagenome / Metatranscriptome	278	Y
F089832	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208090_100001831	F012658	N/A	MFGTAYAVRKNNLNTIFASMIAGKYTSVIDPKGRVYAGLINAVMREDGSGRNWIVTITNQTKSERVFIHAA
Ga0208090_100001851	F000325	AGGAG	MKVADGNDKLGKGCLVVSRPVGDTCPPTCAFLGDGCYAEQTEKMYPNVRPAGMQNLITEKNRIRAMILEAIRKEKSIRWHERGDWFLNGELDTNYVENVMWACESILADGVALPDMWFYTHIYDSRLVAFEKYMNVYASIHNDTDMNEAKAQGFKLFAWCDSDQKIAKKRPKRKAAAAEWRNSLPKLVVLNGTKFITCPEIRRGRGVVTCTPTKGSVDCNLCVKGLANVLFPSH
Ga0208090_100001854	F089832	GGCGG	MSKFYIKSNTLELIYSTDKSPLEAAVVALGETNKFDVLDEHFYIDERGMKDYATAKPDTIVIPTKLVAAEAGWTM