Scaffold Ga0208090_1000003

Overview

Basic Information

• Taxon OID: 3300020513
• Scaffold ID: Ga0208090_1000003
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107649
• Total Scaffold Genes: 172
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 129 (75.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F000868	Metagenome / Metatranscriptome	853	Y
F005745	Metagenome / Metatranscriptome	391	Y
F013526	Metagenome / Metatranscriptome	270	Y
F015988	Metagenome / Metatranscriptome	250	Y
F021109	Metagenome	220	Y
F034902	Metagenome / Metatranscriptome	173	Y
F049499	Metagenome	146	Y
F052590	Metagenome / Metatranscriptome	142	Y
F068817	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208090_1000003113	F052590	AGGAG	MIVTNLEKMEKIVAKNKELSWLGWDVRDLKRSESGRTAVNGVRVDGVWYLQRIYSVTRNGWDIPNKYRG
Ga0208090_100000344	F021109	AGG	MDTLNRIRQEQQARYAIEHEKAMAKSPWIRESVKAFRNATPEQLAQIEAIVAKRAGK
Ga0208090_100000347	F013526	AGGAG	MKKNVLISFVTDAETDLQAIFALNRIMEKLPESDLEKFEAFEVLDAVQ
Ga0208090_100000355	F000808	GAGG	MEYTYSLTTSYDGELVNTLRVSDMMEAVDAWNKCVDYGNAKDYATYNLSDPTGKMYTKTFYANGEVVIK
Ga0208090_100000356	F049499	AGG	MKTMDYRMVDVLNADQLEVNDLIGVADEIVKVISIAPLSDGFSLVIENEFGEKDLIEILDDEQFELFILE
Ga0208090_100000360	F000684	AGGA	MTLGGYTYQIGDLFTTSKTGVTGRIEKFVPQSKNVTRVMLRLANGQQRFAMVKTY
Ga0208090_100000361	F034902	AGGA	MISTALAIQDATKEAIHDEDVMDMARSIYLSRHEVSEDEFIRMMYIYSAHLSAMTATLVTHACLTESQLNDMLETIKEMEALGKDIE
Ga0208090_100000364	F000868	AGGA	MSSFLENENQMVIDAIYHEIGEMLVEDWVNSNLDEGQMFADFRFAEMSDDNYIKGRFNLFYDLKPGDQYYLEWDEEA
Ga0208090_100000367	F015988	AGGA	MSNYLLEYMKIHLISLEQDLENIAQEMELLDPESKACKELDYEYNHMSGQILSTRHFIQVGEEHAGN
Ga0208090_100000368	F005745	AGGAG	MQAINELEPYLQKAVDAGISGLDIMHGHLKTLMLEAERELEEASRIEIENDYSDAIESMERKYWEGQCDALSHLYALTYQLSFAIAERDGQ
Ga0208090_100000378	F068817	GAG	MSDLDEFMKDPWKRFNEMRKTPHECDYDYRIDSSGTMFFEICKLCLDTKGVVEMNNNEELND