Scaffold Ga0207936_1000692

Overview

Basic Information

• Taxon OID: 3300020512
• Scaffold ID: Ga0207936_1000692
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 19NOV2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7344
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021128	Metagenome	220	N
F025268	Metagenome / Metatranscriptome	202	N
F040160	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207936_10006922	F025268	N/A	MASDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQSWPLNHTTEQKAFRFGRGFHDPCTPFRAINDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGAGHKWMGITTDDGTYCGLVDDQAWFVPEHTVNNEAGYDLCAIRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNADTAFNAGLAPFNEADPATWARLVRVPRYVKTVLENGCAYVPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYGEAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHSFLHRLPKSKNLYGSCCPVQSYIVPENNQDCYSCAGVGDIVVPA
Ga0207936_10006924	F040160	N/A	MTTEKVKSLCAAITAHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIDAIGTEEQGAFKKTKSSSRTKEPKDGTIDPDLDEI
Ga0207936_10006927	F021128	AGG	MKLKNKNLAPVGGWFWRYEIKRDKLTFPAIVYGSTWSSLMQNIQKDYNSNGIQVPANIEQMVEDQICQRQPSDRCWYSDGLGDKIAQAIHTVAATADKVLGTKLEHKARGCSSCNKRRNTLNKVLS