NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207936_1000692

Scaffold Ga0207936_1000692


Overview

Basic Information
Taxon OID3300020512 Open in IMG/M
Scaffold IDGa0207936_1000692 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 19NOV2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7344
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021128Metagenome220N
F025268Metagenome / Metatranscriptome202N
F040160Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0207936_10006922F025268N/AMASDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQSWPLNHTTEQKAFRFGRGFHDPCTPFRAINDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGAGHKWMGITTDDGTYCGLVDDQAWFVPEHTVNNEAGYDLCAIRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNADTAFNAGLAPFNEADPATWARLVRVPRYVKTVLENGCAYVPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYGEAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHSFLHRLPKSKNLYGSCCPVQSYIVPENNQDCYSCAGVGDIVVPA
Ga0207936_10006924F040160N/AMTTEKVKSLCAAITAHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIDAIGTEEQGAFKKTKSSSRTKEPKDGTIDPDLDEI
Ga0207936_10006927F021128AGGMKLKNKNLAPVGGWFWRYEIKRDKLTFPAIVYGSTWSSLMQNIQKDYNSNGIQVPANIEQMVEDQICQRQPSDRCWYSDGLGDKIAQAIHTVAATADKVLGTKLEHKARGCSSCNKRRNTLNKVLS

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