Scaffold Ga0207936_1000183

Overview

Basic Information

• Taxon OID: 3300020512
• Scaffold ID: Ga0207936_1000183
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 19NOV2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13763
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074432	Metagenome / Metatranscriptome	119	N
F102500	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207936_10001831	F102500	N/A	MRLGGIQALEFYQDVEKSNFHFAYVNSARNYIINKVENLFNATQRAVMFANKETFIIHRADQDCSHSSGSNDETTDHTLVSDFVQSTYPKQKYLKIVATILEKHDLINEDLFFIQFDNIHLADFLSFINNRFDKKKIPI
Ga0207936_10001836	F074432	N/A	MTKGVRHVLVPKSAYQIVVFVLGASARIRLYSIGVYCNQIDGVEMDLVPGMYTLCVCGPYSHVGLRVAPGCTAFFSLHKHFFKPSETFTVVVRSNINNTPLTLRKLCMFEAVYRGFSVEILPLSVKSKLFRPRNINSDIENVLNLPLCVCSDIYYSDTGDENETPSVETNNT