Scaffold Ga0207936_1000082

Overview

Basic Information

• Taxon OID: 3300020512
• Scaffold ID: Ga0207936_1000082
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 19NOV2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19750
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F015061	Metagenome / Metatranscriptome	257	Y
F056542	Metagenome / Metatranscriptome	137	Y
F061533	Metagenome	131	N
F075040	Metagenome	119	Y
F089880	Metagenome	108	N
F101028	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207936_100008214	F014513	GGA	MADTLEEMVELVKGFVGDSGTCSYERGVKAVNQARRLLWNKRGWTSQEEYVQICCVNDCFTLPARYEQIKLAWIGNESASLADEWFNATNAFALHADHSCHRLITEVGGLHVLFRDYTTRPYQIAVLAENSEDIGVELMFEAQDEYSTYHKVTVTAQAYPSIGKSDVSVRGIRTVSKPVTKGRIRVYAYDATLETKTLIAIYQPNDANPTFRRFKAPKTCECITLYASKKYFDLTDPKELVEFIPDAMIYAVLALNSRENRKAQEFLSNLSLAVQEQEKEMSNVEIPTAAPIRFANYSRADNLIGSDLLSPSPNDYFLSR
Ga0207936_100008215	F056542	N/A	MTPLKGTEPKLVSGGSPTRGMIREGMGNMNPPNKGNNPYSSAPMPKSGKPVGQK
Ga0207936_100008217	F101028	N/A	GEAETIVNDIQNGNFQGAYPYRATNYRTSDGILLSVSGIIYFLKMVNNRAFAYKIIEGNDPGMMHTWFVQAEDRAYIQNGYQNAIAWDGVLGTLTASEIQNGDYCEIVSLGDGVTNTNFTLIGAPSNTVGVKFTAIITDTQRGTGTGTVKLPAYRLNPYLAKMPIGTIMEYAFGRVFVSDRFNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKVMPELGYNLRGQGQLVVLTGNGAFSMDVSLPRSQWNTSNIQRISLLGRGCTSPNLALVNSELWFRSHDGWAFYSNTQSEFNRYFSLRKLSRDVNKWVSNDTPWMKQFASTIFFDNYLINTVAPQTYRAEGVEGLNRFHRGMVVLDLDQSSTPAPDAQLSFRWNGVWTGIRPTQLLTALIQGEKRGFGFSFDKDNKNRLYEFTTAQGDDYGPNGTRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVDSYVDFRADSNPCWSQLKVPTTFGCDPCSPVVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWNYNIVN
Ga0207936_10000823	F015061	GAG	MSEPTPQNETSKTILEAFSFIKCEDEKLNERVHAMGSLLHTASMMVVRSESRKGEGFEAIKYLELAFLYYKESQFRKRFDTEEKEETSRIIS
Ga0207936_10000825	F089880	N/A	MKKKELELFSPTQEGVLVPLSTYLRHMGEFVKDEWPGITITEAHIKKAWSKLQKNEYLDDDAPDEMLEMYERMSADWDMAKEMEEERQNVDDYKPEPIAATPEPVNESLALVESVKNGLELSSFTQKFDIGAGMTQCVPKGKVEMKDWVAAFAFGLTLESGAQWIIGDSVCALENGGHEDVVNQLCSNFKKSYSTVSGYARACRAFPVGKRDPMLPFTVYREIGNANFGDDKTNKKKQDELLEAAKTEKLSSTEVRNRVRHEQGKDDRPTHHRYLVLNVTNFGNSEIVRAMPEEVQEHQLLIDLGDKSWFDPAEGDWIKFLKEQ
Ga0207936_10000826	F061533	N/A	MSNQLDGIEQKDIIKRVTGKVTKLWEPKTFTGPKGEFVIQGGDIEIDGNTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHESYEGKNGKVDRDIIKVTATGKIEFDQPSEEPARVASSATPKSIVTDNPLKAIDNIVEMHQYIDSLVRHAYKDVVDDEETLRSYVSSVFIETNRKGIHYTKTKKVEEPKVEEPKAVEPDPSDWASAIVPSGSQKGKKLAAIGKPALTKLYEYYLEKGFTTPFAKCVEKAAEDLNLDAPTEVDDIPY
Ga0207936_10000829	F075040	N/A	MKDTPTVKKESVEKPVVQNSDLQREVYLRLISSAAADGRFLLGNLPNANAVVKQGDHLRGVAELLASCYEK