NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208593_1005645

Scaffold Ga0208593_1005645


Overview

Basic Information
Taxon OID3300020511 Open in IMG/M
Scaffold IDGa0208593_1005645 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 15JUL2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1552
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032582Metagenome179N
F043909Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0208593_10056451F032582N/AMHRRSAWNHLHPSKPMRVDFENTPTFIISKPESEKEKRCIRYMKSFGIDAVPIYGFRSHNCGISTDYYHSREKEKVKVKTIVAGLSHFSAWSAIKWMVEAKLTDHRTFLIVEDDVEFLDKSWKALANDNLQFVPNDWHVVYLGSCCADPIEDHGYIAANLYKLVRGMCTHAYLVNYEGACKLLETNQKVWGPIDIQMLVDSMPRMNFYGILPRLATQENANLYP
Ga0208593_10056452F043909N/AMMRDIIRDISLKALKRFANGGDGHADLLMQIEDLRKTLEIRTKEHEEHLTEVREERDHWLSLYDEIKFAAEFLMSYAKNDVPKLAEQTDWEVGKIVLPAETGTYYFNPAIMQEADGRIMLFARRCRNKREKDEDVYTEKNDIVAFELSKDLRATKKSILQLTSNYPNEQFEDPRVVKFGDKYGVSCCTFVPFKSYAHQAMFLLDKQFLNVGRFDPIYGNNYAQAMINDGHEKNWLYFVHDNAPHMVYSANPHVVVRLNGRLEKDAEYVTEEFNPLWKFGEVRGGTNPIYADGL
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