Scaffold Ga0208086_1007423

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208086_1007423

Scaffold Ga0208086_1007423

Overview

Basic Information
Taxon OID	3300020510 Open in IMG/M
Scaffold ID	Ga0208086_1007423 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 06JUL2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1968
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F016268	Metagenome / Metatranscriptome	248	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208086_10074231	F016268	N/A	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYSEVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEF
Ga0208086_10074233	F000922	AGG	MKMPKEVWREACNLYLAGMDWETIAGKLGVNKTTLCKRASLEGVTKVKREMQTVCIEKKTESLESLSILVRNRLAADAAATIERIEGYSLDGIKDESVRETILGSVAKRSALVFGWSEQGEAASVSINLLGSMPDRISEIQVTGETGLK

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