Scaffold Ga0208086_1002183

Overview

Basic Information

• Taxon OID: 3300020510
• Scaffold ID: Ga0208086_1002183
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 06JUL2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4976
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019447	Metagenome	229	N
F082686	Metagenome	113	N
F086682	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208086_100218311	F082686	N/A	MGRLILTEDDKNDIKLQYQGSVDKKFYDFLRANVEVEGRNVEYFEKPFVLLYVDGKSRLLNNSKKYLVNVLLNAYGDDFPNLNDASKRLTAKKFIDELRKQYFYED
Ga0208086_10021834	F019447	N/A	MKKIPKDKLVAALKILYKLWSREHDTDSDWPSRHNIEWESGVPYDFFTKYSKQLGLGNDADDYYYWMNALEENEDNLDNETLTVDNVIVPKYYTFDVETYEDRVEQVHVIYEGQVEGYFNEDQLSRSFYELGQGEVFDFYDFRETDRDYGDGEGNGIELRSITMVSDVIPESNKKRKVMKESKLDSFIDSLNESETKFLIEKLQKKLF
Ga0208086_10021839	F086682	N/A	MSKKSPYSNAYKIGLSVFIVLVVLISTIVISIIKSCEPKVSRFFNPKTNMTDTVFYDGPDTIYLPNTQKIIVHDTFRVVCHKKHCEEVKVIKDTTTK