Scaffold Ga0208594_1001763

Overview

Basic Information

• Taxon OID: 3300020509
• Scaffold ID: Ga0208594_1001763
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 14SEP2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2994
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F003377	Metagenome / Metatranscriptome	490	Y
F039989	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208594_10017632	F002540	AGGAGG	VTNYEATPAELDKYGANLNVWQQIQLLSAWSPLIGYGQRFVNEVDPYKRSIIVGEACEWLASKTKAVTDDQLVRLISDVLKTKEGEALVRFCLMQVEGRK
Ga0208594_10017635	F039989	GGAGG	VRFLLAFAVVLVGCVATLPSDNGVTADLACETARMVVQMRNEIAPSPASDKCENCDGTGKIGDGRIVMTCPVCKGTGKTPKSVLVRPACPDGKCRP
Ga0208594_10017637	F003377	GAG	MTDEVKGTLFSIMERWGFPTLVAIVAMWVLRQDVLLPLVESHREFVSQLGETQRDISAAIQEQTRLLYALQPKSAA