Scaffold Ga0208225_1000285

Overview

Basic Information

• Taxon OID: 3300020508
• Scaffold ID: Ga0208225_1000285
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 15JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13005
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064384	Metagenome / Metatranscriptome	128	N
F089849	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208225_10002852	F089849	GGAG	MLSIVTTTTILGIDMPECPDEPDRFVSAWGGYIPITERQKELILAIKVKRDELLPDELKQFADNERAHTDDNCPSMGRNPGSSSAQARNPSRSSPTQGPPKAKKQALTQRPISPYRPEIVPDGCREYAAVCSGPVLSTHIAYRPSSEFRDILQVPATPMHVTDYGNIIQDELFGGSDQDAPVVLRTNPVHDASLDCLDSGDGDDDCVANESALESDDEMAASENF
Ga0208225_10002854	F064384	AGGAGG	LEPIPRGELPSQDDIKGILHELARFNFFKRELPTFPVSFPQKAPTQKPFDVYHVPTGILTPRDLEYKNERNVPIPPRDDQTSALMQLLTCGHVKPFRRDSTMIFVKRGQWVLMDMNNPGFEIENCAVHFADIPREGVLHIARDYANTTFKSFRDGKSGIPSLPERRHANKVFNLFLI