Scaffold Ga0208697_1012900

Overview

Basic Information

• Taxon OID: 3300020507
• Scaffold ID: Ga0208697_1012900
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1067
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024477	Metagenome / Metatranscriptome	205	Y
F037570	Metagenome / Metatranscriptome	167	N
F039941	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208697_10129001	F024477	N/A	MSYDIIKNSSKASSFELLIKNITLIEKVEDYYKELDQITDNRFNCHGKPDPDIYFMKDIIKIRLMELKRLQTQKTNELIKLSQ
Ga0208697_10129003	F039941	N/A	MNIETLALRLEEIKLSRIEVLEEKKVLAEELLDGKLRIELKRSIMENMSLLIQLDLTLNEAEILYENLIECRLIHARYRQQSG
Ga0208697_10129004	F037570	AGTAGG	MNIKKLDLLKIRNLKFRASQRQVIIDRILRQKDLEKDLWKVSIKTLIILAKIKFRCEELERISENLQQTVINEY