Scaffold Ga0208697_1002678

Overview

Basic Information

• Taxon OID: 3300020507
• Scaffold ID: Ga0208697_1002678
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2703
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011134	Metagenome / Metatranscriptome	294	N
F018323	Metagenome / Metatranscriptome	235	N
F073465	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208697_10026784	F073465	N/A	MSNWRYRWRRPRYRPAPPAPRIEAVPIRSIEALLMAVIQAMNAIPPSDNFDTALATRLYYTVMCLRRFFPEWGVYLTPVHNSNRIIPHQVDDQGFSELENDSETEPLVSDV
Ga0208697_10026786	F011134	N/A	MSTFAKLEENYDLKETLVDTIKIDLIRQFKMCVDEINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRVEDPGWSINNTRRSFLVLLTSEDIGLMNNHLESREK
Ga0208697_10026788	F018323	N/A	GNTKNNDEIVELIKSLEENSVDLTSAMDTVRVLDELELPLFEHILNNQICKELNTISTEINHDREDERVFRKIFYKIRVLKLKDSEWKFKQRAKKSTYSRNRMIEEKRLTLSQEEARELVKFERETEIINQINIEKSFEENRHLFKLIKESRFTRVGRRNWLSFYRFPDLRKITIYNEKNFLCKIEGIRRKYSRLKWSIVL