Scaffold Ga0208697_1002574

Overview

Basic Information

• Taxon OID: 3300020507
• Scaffold ID: Ga0208697_1002574
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2751
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019600	Metagenome / Metatranscriptome	228	N
F031767	Metagenome / Metatranscriptome	181	N
F033695	Metagenome / Metatranscriptome	176	N
F033705	Metagenome / Metatranscriptome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208697_10025741	F033695	N/A	MEGFNQEFKLAMEEVQELTRRSAMYSSRGNNGPTKVDIKAVQYYRIEVNKRIDYIQEMMEVFPFKTDIFYLWKIHQNILKLLSMILSNEDQKDRCQKLDSYVKVLEKFKNETDYSYWKDYISIHENKITEGS
Ga0208697_10025742	F031767	GGA	MNNNSINQPKVIVVKRLERKPRQNYVKTLASLKNIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKKNVSTNENS
Ga0208697_10025743	F019600	N/A	MDAPDTDTSKLETGYNLEKSLKEARETVYEGRKAVEDLTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSIAAYQRYNGDAILTSNLKALNKEILKATGLVSSSDIEEMKEIIEDLANWKLNEQ
Ga0208697_10025744	F033705	N/A	MEDPVVAIHPLDYLFQGLEAAEVLKLHLVSLIKEEANRLRNLKLKLNSIRKLVEVNQTNSRKLVQIFQEDQNIMPLVAKFITILTELDEISACNTISEMIGVLNKITEWMLQIQIHLN