Scaffold Ga0208697_1001372

Overview

Basic Information

• Taxon OID: 3300020507
• Scaffold ID: Ga0208697_1001372
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3826
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012769	Metagenome / Metatranscriptome	277	N
F013275	Metagenome / Metatranscriptome	272	N
F014232	Metagenome / Metatranscriptome	264	N
F023279	Metagenome / Metatranscriptome	210	N
F028152	Metagenome / Metatranscriptome	192	N
F054590	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208697_10013722	F023279	GAG	MADSSKENTEAIIDTIKSELAIGFKNCIDKIDTEKKVVDRHNWEIYVKINKILHNSRRLDPQWAIEGDIGSSWSLRSILERDFKSKILNIDLSEIDSIDLEGYEELHQSLKDLRTNNPGWSINKTRRSSPILLTPTQIGLQEENIS
Ga0208697_10013725	F013275	N/A	MEIIGMDDFINPYKDVKLKTHLLWMTLSTIANYSSAGNISSKYVRAYLAIMVWLLVTFNSDRSGAQRLIMAFLYLEFNSIDRIIEAVNHSAIIIKAAMLCMGLSSILVNPEMNYEQAIVLTILLAAAEYIPYQWEIETLIPRAIKYFKIK
Ga0208697_10013726	F054590	N/A	MIENIAELRKNVGFTKLHRLANYKQRRQIADLLLGNDLKENEISHLIHVHNCLKQIDVLLKILEEIGGILLKNNVGSSGILFKKRKRNLIHPWMI
Ga0208697_10013727	F028152	N/A	MDDIGEAIRSVTRIASKARPLLEPRRQEIHAVMHTNGDPYVIRACTNSLIVINEIERMQSETESVCDYLFNHYFTSEYAKEKRAVLVLQPSPVVSDKNFFSHRLESLKIQRENFVRVEKVSIGKLSAQYCLTPIFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKERINFGVTEVRKTSPYEYKDPREVNFKIPKIKDEIKVVTRVRNPTYLDFLYRPPIN
Ga0208697_10013728	F014232	N/A	MSQEKSEINNKVITKEDTSEDCGHEPHGCTCPPSAEYEKSTEIRSLTNLIRLVYSVPLVNGLISYKPLERIWNSKKVIRKTDPGWILADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIKLKAIHPNWEMYLEDSKNHHFCKCLQCSEVKRRYQEMLDATSSEESNSE
Ga0208697_10013729	F012769	N/A	MQFQYPKFKVRELVKDKFDPILKEEYQEETAMKVFKASIEVIRQSGNRLTEQHYLPYSPEEKEAVIKEVIAQISEWKNRILNRRQKEKITRIDRALSKRILDILAEYLRALEETDIAKRQSKLYHVDAVAAITELQISRKFASPERKPVKRKIH