Scaffold Ga0208091_1007713

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1007713
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1389
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029732	Metagenome / Metatranscriptome	187	Y
F058715	Metagenome	134	N
F059002	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_10077132	F029732	AGG	MKYLSKTKPTVEVEFIAEAQLRIGETKRLCVIYQRGEIFYVRPKAEFFDKFVLDEPQIQT
Ga0208091_10077133	F059002	N/A	MNILNEIKNGISRLLGVHKKVETKEVLRTLKPKRSQKRGRGRPKGLKIPQQIVDAVRQADKSMTNKQLAAKYRVSYFWVWSVRSKKLRLTR
Ga0208091_10077135	F058715	AGGAGG	VSLLEKLGLSKQSMERMLGAVAPLKKTKIKRYRRYETVPADIRKAILGEHSSYTCRELSKKYGISSSTIWDIRDSKSKIE