NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208091_1003937

Scaffold Ga0208091_1003937


Overview

Basic Information
Taxon OID3300020506 Open in IMG/M
Scaffold IDGa0208091_1003937 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2086
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F005503Metagenome / Metatranscriptome398Y

Sequences

Protein IDFamilyRBSSequence
Ga0208091_10039371F005503N/ALFIFMVVACILWAICSYAVGYKEGHKDGYQRGKAVGRHASGQAVR
Ga0208091_10039372F001897AGGCGGMAFMDSYEGNKERTDRWIATYPQGRLETHIVEFNAEKGYVLVQAKAWRNQTEINPAGIDYAHGFLAAYSEKMRRWMIEDTCTSALMRVMALVMGGTEKATKEVMASVKTETRAADYDYWTTKHGDVPSYKTREEAEEADETGWAVNGVPMCSHGSMRWNQSKPDAPKAWAGYFCSEKMKEKQCKPQWHVLTSDGTFKPQV
Ga0208091_10039373F000403GGTGGLDVGKMSDYIEIIHPQSMTAKLLCNGVVIEEYKIEQCDKCSQLRRLDQFGYQKGYDRTENIIWFCGDCR
Ga0208091_10039374F000903AGGAGGMIAAISHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEMVVAKRLGYDYQPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVTGNTPKMHIVGWMPVAVAKKPRYKNTSQNNWTVPQVNLQPIETLIRSNYAHPSI
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