Scaffold Ga0208091_1001354

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1001354
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3893
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001460	Metagenome / Metatranscriptome	690	Y
F020171	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_10013543	F000852	GGA	MATKREYLKSQGITVGVRGRFSGAAKVALAEATTKGITFTAEKPVKKAK
Ga0208091_10013545	F000263	AGG	MKTLYKDDELPSHLQRLVDAGVNGLDIMHGELKNLMLIAEEKLAWAQSIENETEEAMDSMERTKAEGRLDTLVELYKLTYDLSFAIGARNEA
Ga0208091_10013547	F001460	AGGAG	MLGYTLDDLNRMTNAVHDAKLFYLRTPSDLMDKEPLRKDLEDAVSFMQGLWAEGYFD
Ga0208091_10013548	F020171	GGAGG	MAGQFIDTVAEHITGAMIQEISEDLFENWSNACLDEGEDYAEYEFMSYASPDLKKQYNDFYGYTEGDDYYLC