Scaffold Ga0208091_1000921

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000921
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4980
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F004051	Metagenome / Metatranscriptome	455	Y
F036238	Metagenome	170	Y
F082676	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_10009211	F082676	AGGA	MPNWVYNTLTIQGPKNEIDSIKDKLNQPYKVLHDSWNMKTGAMEVTESVYSAPVFSFWNIHSPLEDGITMEEYVQQPDRSSVDINDPDWFAK
Ga0208091_100092111	F004051	N/A	MLQYNLTKKRGKMTIEGKLYQVGDLFTTLKSKRTGVIKEIHPQASGSVRVLLEMPTKETRWTSVSAKTLLG
Ga0208091_10009212	F036238	AGGCGG	MGDRANFGFRQSSGETIMLYGHWAGHDMLGNLASAVEAARSRWKDESYATRIVVSHLVGDQWHETTGWGLTVNSILDNEHKIPLIDWSTGTFSLHEEAPWSESTECKVRGMQDEPMFTMTLDSFVNKYARATV
Ga0208091_10009214	F001043	GAG	LKVIHQNTSQQDTQGDNMSDYKDGFNDGYKFAREEIIEKLSEIDITDIDSWILDRLSEMMEGGKL
Ga0208091_10009215	F000311	GGAG	MYFELTAPDKLSFEMAYWDAQILGLDPQVLSALTFNVGTGSIEKVSRIRDKHNLIESYTSEYEPTGYTGR