Scaffold Ga0208091_1000679

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000679
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6004
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030085	Metagenome	186	N
F062744	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_10006793	F062744	N/A	MDEALQAKSIKKHYRIIVDFELDVPDESYVVVTHERKGLSKDLCGYALSCQRLTVYSSDHPKVGRFRRKPENIKAHFDNQEEFLDYSI
Ga0208091_10006796	F030085	N/A	MIKLTHLLLEQLLSEISTNTPLYHRSLRKMNVGDAVEIPRDTANKHYLTYKMGELALEEERKETAPDAPSRLNCVYSSLIPRSRFIDKGYLYRIKPTGRIFVADSTLIDNIMEQFDREYYEYISRYDQPERTEIEKELLQNPKRLMEYLPREAYEYWMGEKPNIAAFGKFALRDIEVLSDGAIVTEVVSESEKSTPFVIGDDVVVTESDKLRAQLTLYLNTKSLAKGEEVKPDYTPEEISSLLNYIGNNIFDGVKAEPSKYTENSYDFLGNLKKGAKLKIISLASNIRGGRSAYNIKAGKYETIMFDFYVDGKLISRNRKNNDKNITHRLTLSRWSNENIPDYSKYLKKI