Scaffold Ga0208091

Basic Information
Taxon OID	3300020506 Open in IMG/M
Scaffold ID	Ga0208091_1000644 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020506 Open in IMG/M

Scaffold ID

Ga0208091_1000644 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6136
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6136

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001009	Metagenome / Metatranscriptome	807	Y
F009604	Metagenome / Metatranscriptome	315	Y
F014847	Metagenome / Metatranscriptome	259	Y
F016528	Metagenome / Metatranscriptome	246	N
F037223	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_10006444	F009604	AGG	MTIQNKCGCGNEIHPERYALGYKICLKCGEKAAAKQKPFGYLHYGHKTAGSIVITSKAGFDNYSKVSYRKNKGSNMGYASRLTTSF
Ga0208091_10006445	F014847	AGG	MEFESNADILRDLMDQLHTLHKENARLLQKIEDLEKHNEELNRKLKSIQALFL
Ga0208091_10006446	F016528	N/A	MINNNELFAKVLAENPLPYRFGDKVNTNRGIGYISGYNFKDREKTWKFTIRPHGLTNYYTDVETVYGKVE
Ga0208091_10006447	F037223	N/A	MTLFEHILIEGRVDDFKKMLSQRFSIDYVQKIINRDTSKNHKNLLWIGKILKTEPDINDEDLFKNLEIFNKVASSTDLYSFRDYSTFLNFLQKKSKEVQMGKMAQIKAGSHTIKDDKRWLVVAPQTHDASRYFGGGTSWCISTSNDRYWKDYYYAQTIVMIKDRTKKPDNDLFKVAIVGNAYEQLWDTNQDDKLNKIRELVKHVDLYNVNDNKLSGDQKINYLGQLPEDLIEDLMNYFNDDEIYERQNDHYYELARERYDNGGKEELLKSLFNTTVAYFDADTDLDEDAFGDLMSRQFADEIQDGNWDEFLSELWGACMTYQGVDDDSFYAEVNTRNFKNLISDTSYDLQTYLDLAKEILKNEDIVNMDNIIKDALIKTSDNGDPYTVIKRQANQLKDTNYNDIILSSLNAYNAKNNPTFIQGQRSLGPDFMGIVNKFKPKNIEDVIKVLSINPRAKDMIDQIQRYRRDLYESKKKRSIKYRDFYKFKG
Ga0208091_10006449	F001009	N/A	MASNLNSEFNYRYQVIGNTPWEKLKTLKGFLVGRKRAAVLEQVADLKYKAKLAELKHLKELPALPHVILNLEAEILELESHLDDQAHAFELNRQEIKILENLIAELYTIAEPTRIPGYTDDQMFEANANNEFTVTIGREIQAEIIANGRPSPAKLLNAMSNPQTLESLKLVGLVPKETILLEQSDIIDALKLNNINEPKLIE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208091_1000644

Overview

Ecosystem & Geography

Associated Families

Sequences