Scaffold Ga0208091_1000604

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000604
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6366
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014593	Metagenome / Metatranscriptome	261	Y
F017988	Metagenome / Metatranscriptome	237	Y
F020142	Metagenome / Metatranscriptome	225	Y
F044369	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_10006041	F044369	N/A	MSKIEHILQKAHKKGIYNETMSLAQNIKNENLKIELADRYEIAYEQAKKSLQKRST
Ga0208091_100060419	F014593	N/A	MDPKKDFKKFFQKLFDTPVDIQGEILTSEELTRKNFIIFVDNYRKAVIRSQEMQEKFGLDLWSWEDLFAKSLEGIIYYTFEEEVADVILWYIYEHYLAEDPEDKVIIFGEEQFMIETSEDLYDLICLVEE
Ga0208091_10006045	F017988	N/A	MKFLELTGFGNNHKHFISLRSISDIEFLPNYTSILLNNGHIVNVIENQKQITDIINYHQSEIVSVEYLDDLEAQFEAYKEMDADRFVTGKDMELPF
Ga0208091_10006049	F020142	N/A	MRRSPKRIEIPGKKWNERFIHKNKTWHVVHKQDEITYAICELRNGVVGGIVERFYI