Scaffold Ga0208091_1000553

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000553
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6691
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F003582	Metagenome / Metatranscriptome	478	Y
F011938	Metagenome / Metatranscriptome	285	Y
F013878	Metagenome / Metatranscriptome	267	Y
F028150	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100055310	F003582	N/A	MNTYRVKIEVDAEVQAFSENDAVDYVNDIFGVDDEVKSVKLVSVKEK
Ga0208091_100055314	F028150	AGGGGG	MNWLKKRLMAILSENFTFLGFFVAWVVLEGSAKTVVGYVTLASVALWFLTIGIREKAEKEEE
Ga0208091_10005534	F000671	GAGG	MEKILCYSCAKSKNKLEAKRSSLLPINLLICDTCITSKFEPRWVIILAGRSNGPDHVKEFILKRRYVGPEVSASELLI
Ga0208091_10005535	F011938	AGG	VKEYYDVVHIVYIHSDKCYGAVEKLGAYASMVRYKKNDEEIEELMENEDFTIMEEIIFKHVEEQE
Ga0208091_10005536	F000473	GAGG	MFIDKSSAKQNEHFKYGINQWTGEPNKPVFYTLEMKKRVHEIQKPPTFMMDVVKYPEFLALRLYEDNFLQFQGSKKEMVIDYVNKVKTLIESYGVRCELEGVPSERVL
Ga0208091_10005538	F013878	AGG	MLNLTELGVEVFIKKAKNIVPYWDNYDLVIWKKDASGFTNVKGMFKNNNWGTAEKIAVDNKGIWKLPTKYVKHFK