Scaffold Ga0208091_1000464

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000464
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7391
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009945	Metagenome	310	Y
F011473	Metagenome	290	Y
F016922	Metagenome	243	Y
F026794	Metagenome	196	Y
F057879	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100046411	F057879	N/A	MTEPSTEPTNPRDTVRPEPVPAGGEQEPSSPFSDASQIPPWEL
Ga0208091_100046412	F026794	GGA	MPDFHNSISDRDERVTASQQLFADLDAREATRGEVTFDELDRRYADPISREEAVALRPFFEAFCENRVVWCYELKERHGRPMHTWTPITEWDAHFKPMCLSLTYRTDDPFATE
Ga0208091_100046414	F009945	GAG	MSTALATFKRDNGIATHRLAGAGHRYAWMAFFATITMKDGTRRAFTELAHEYSIADLMRRNKIADADTELEACQFLAERNGIPWPADEPKRKAKP
Ga0208091_10004643	F011473	N/A	MNWKKYITDPATNRPKRGAISRIAALLGTHYNCVRRMFDGIWTPTEEEANGLRAIVASRTNLAPKKRSDAGKKRAAYRKRAVAKSCAVPPQLKGLRSAKKTAQK
Ga0208091_10004647	F016922	GGAGG	VSAIRINSRAIQCVADAEGATAYFIRYGGREFIVTAHSRLEADIAVEYYRAPESDESQPDLLK