Scaffold Ga0208091_1000200

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000200
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13172
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (76.32%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001019	Metagenome / Metatranscriptome	804	Y
F002071	Metagenome / Metatranscriptome	596	Y
F003663	Metagenome / Metatranscriptome	474	Y
F004666	Metagenome / Metatranscriptome	428	Y
F007470	Metagenome / Metatranscriptome	350	Y
F014250	Metagenome / Metatranscriptome	264	Y
F017995	Metagenome / Metatranscriptome	237	Y
F019324	Metagenome / Metatranscriptome	230	Y
F043940	Metagenome / Metatranscriptome	155	Y
F084151	Metagenome / Metatranscriptome	112	Y
F095357	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100020010	F019324	GGA	MMLGYSEKDLDDMIYAIQSAVTTVNPDDDPFLHGNLWKAQEFLQGLWAEGYFD
Ga0208091_100020011	F000868	AGGA	MSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQFYADFRFAEMCESNYLKGRFNQFYDLTPDDEHYIEWDEEA
Ga0208091_100020013	F000450	AGGCGG	MGDRANFGFVQPNGNTVVLYGHWAGYQMLGRLADAVIAARPRWNDSSYATRIAISQLVADQWNMETGWGLYVNEIGDNEHKIAIIDWEQQTFSLHEEAPRNDLDNKVNGMNNNALFTMDLTAFCEKYALEQILTV
Ga0208091_100020015	F007470	AGGAG	MDYQDGFEDGVKFAREVIINNIRLWAETSDDGQILDDVADRLEFGKVDYDL
Ga0208091_100020016	F000311	GGA	MYFELTAPDRLSMERAYWDAQIIGLDPQAMSPLTFNIGTGSIEKVSKIRDKYNLTESYTSDYEPTGYIRR
Ga0208091_10002002	F095357	AGGCGG	MATSKEIKLGELLANSVEDHWFNPATLGHYLSQQPHWTIDRVMEVVLWIIEKNAGVYKDKAGHQEVSEGLVIAYKLDQLVDRIKQSNKFNHIRIP
Ga0208091_100020022	F043940	AGG	MRNRFRVEIYDENKANDLTIYSEQGVDKDYLTELVFSNRRRFFGNVRAYVFDTLKKKKTTALYLPMEIVNEGRPKQLTKYEIGLT
Ga0208091_100020024	F002071	AGGA	MATTLEVGQTYTTTQSGITGIIKAVDNHPSGTNRILLDVNGAERWTSAPAK
Ga0208091_100020026	F003663	GGGGG	MLSTAIEILDVTKNSIFHDEIMGLAGELHTRRNELSDETFAKYLFMYSAALSSKVADGVTKVLLTEQQMSDLLATMDEMDNLAETILEEDNNGK
Ga0208091_10002003	F004666	N/A	MNMITKGSITMATKREYLASKGITVGRRGRFSSAAMKAIQDAENQGIQFTAEKKTPKK
Ga0208091_100020031	F017995	AGGA	MAKVKQYLEIISAECDECGGAGFVFWGDEKNYDVEPCECVADVADELTVDWVNE
Ga0208091_100020032	F000447	AGG	MGYVEIFRLDNEGAGWVDLSEATPQELLDLEIGLFQEGAL
Ga0208091_100020036	F084151	AGGAG	MTIEYSIWQGSRLLSVGNTATDIKDIDKVIATLNDSEIAKKVKFAANVMKVEVK
Ga0208091_10002005	F001019	GGAGG	MNYGPTLEILEVEYSCSPGGVDTYEVYEIDHLPMDCPVYETESLTDAVKFCYNLGQDFIVRTVAAWHRNEEAYA
Ga0208091_10002008	F014250	AGAAG	MMYSDILDPRLQNLVDLGESGTDILHGELKNLMLEAETQFGYAQAYEDETEEAMDSMERKYWEGQLDALTHVYALTYQLAFAIAERKKK