Scaffold Ga0208091

Basic Information
Taxon OID	3300020506 Open in IMG/M
Scaffold ID	Ga0208091_1000199 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020506 Open in IMG/M

Scaffold ID

Ga0208091_1000199 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13214
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (8.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13214

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (8.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067450	Metagenome	125	N
F075991	Metagenome	118	N
F082207	Metagenome	113	N
F088235	Metagenome	109	Y
F095348	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100019910	F095348	N/A	MACCNCCENTLILGCINSCDAVFDTGIVVDALNEGVWVLQLSFGSISIYYSIDVLDGETVIFTMTNLNENYTYTGQIIDPNGEIIKVVRDGIEYDCIEFSTKVGLSNNQINL
Ga0208091_100019914	F067450	N/A	MLYLITLSIFAAFAIKFLHYCIGSPIQGEYYSGRIFSAYGKFISKLYLDFEAKEKNRVWAKYNAWKQKRDKELNEELQNKTANEADTIYKEYLQQVESLYNDVENNMKNNPWSMLGACPICFGTWVSLFTFTFFVIFVPLPWWFIFIGTPTAVIVSRYIKIS
Ga0208091_100019916	F082207	N/A	MNCVAKAVNKLFPNQDLTEFYDRKLGVGMGDIQRMIPTDLSVWAVYCNHHKCVNFDLIRQLPKTEHFIPLFLFSSVMSDRFKLHCEFALWDRNTVIVNDIEFDADEYFQRNKILQVAALIKFETHEILIAKK
Ga0208091_100019917	F075991	N/A	MTNDEKKAALIDKIGEQKVNELTQNIWLLLGALSTAKYAIAQFEPKKLKFEMKKRFMDLHTSINLFVNNFEKAATPTERELLNESTYDNVAVIAEVVAMASTLPESQSEWYLNECKKLLFLAYNKSQNELRSESGE
Ga0208091_10001998	F088235	N/A	MNISERLEILAQVVNDDNTARRISQAAAIQVIAEYKQRIFFLGLDTSGGSIGQYSVNPFYINPLSLTTVSAGGIKPQGKNGQSVFKNGNPHKTKYLTQGYKELRDLTGRQSNTVDLNFSGSLFQSIKVTESGSVSAITYTNDEMANIMVFNEDRFAKDISTVSNEEREMGETAARNELLAILEEIDLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208091_1000199

Overview

Ecosystem & Geography

Associated Families

Sequences